Fix quotes
Fix quotes
Tweak link presenation
Fix quotes; shorten one line
Basic gene prediction with Artemis
Added section on ORF identification with Artemis, two slides on CDS prediction
Multiple flavours of BLAST etc
Added Glimmer3 to GFF conversion script
Added CDS prediction section slides
Core BLAST tools; help; minimal example
Merge branch 'new' of https://github.com/peterjc/Teaching into pjc_tweaks

Merged Peter's tweaks, and additional BLAST slides.

Conflicts:
	Introduction_To_Bioinformatics/presentation/part3_workshop.tex
Merge branch 'pjc_tweaks'

Merges Peter's presentation tweaks, and new BLAST slides into the master.
Relocated some of Peter's slides
Added slides on gene (CDS) prediction in prokaryotes

Also slides on interpreting/assessing predictive output
Added slides on BLAST/MUMmer visualisation in ACT
BLAST output formats, e-value
Enlarge alignment matrix; could tweak theme layout too?
Added Genome Alignment and Functional Prediction slides

Also added outline/framework for next set of slides
Added data files for functional annotation

InterProScan and RAST functional annotation output
Add note; tweak slide title; comment out final blank slide