added recombination_methods_ind.hpp to pkginclude_HEADERS
Version numbers changed to 0.1.8
deleted
Renamed from README
added AUTOMAKE_OPTIONS = foreign
Regenerated from automake
Added installation instructions and some other basic info
Added detailed Intro, and some comments on documentation
Added documentation of example programs
Fixed formatting issues in documentation of RHH
New files added.  These take functions previously in diploid_functions.tcc and separate them out based on what type of simulation they are used for.
Removed unnecessary #includes and added #includes to new .tcc files
added new .tcc files to pkginclude_HEADERS