Add scalpel and hall-lab-sv-tools to default bcbio-nextgen install: chapmanb/bcbio-nextgen#432
Update to latest version of snpEff, GEMINI and VEP. Prefer brew installs for snpEff and VEP, maintaining old snpEff for short-term back-compatibility
Include additional perl libraries in local install required by VEP
Provide download target for dbNSFP to support use with VEP. Add additional required perl library for proxy-friendly downloads from VEP