add manifest to deobfJar and add some gitignore for intellij

Adding the manifest to deobfJar is required to make FTC run without a dummy jar in the mods folder.

I'm working on NEI <> TFC integration so I would very much appreciate this!
(I might create some more small PRs to avoid having to use reflection later on)

Also, is there any way to convince you guys to use a CI system and maven repo so I can automatically build against the latest build?
I would understand if you don't want to do any setup yourself. I can do it for you or just make an account on my server.

Thanks for reading,
Dries007