+1
On Apr 5, 2014 11:05 AM, "josenavas" <notifications@github.com> wrote:

> In skbio/parse/sequences/stockholm.py:
>
> > +    Parameters
> > +    ----------
> > +    infile : open file object
> > +        An open stockholm file.
> > +
> > +    seq_constructor : BiologicalSequence object
> > +        The biologicalsequence object that corresponds to what the stockholm
> > +        file holds. See skbio.core.sequence
> > +
> > +    strict : bool (optional)
> > +        Turns on strict parsing of GR and GC lines to ensure one char per pos
> > +        Default: False
> > +
> > +    Returns
> > +    -------
> > +    sto : named tuple
>
> format can be seen from memory to disk (serialization) and parse is from
> disk to memory. In this case I'd recommend to move it to core and if it
> represents an alignment, it should go under core.alignment. What others
> think?
>
> --
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> .
>