new devel version

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@86535 bc3139a8-67e5-0310-9ffc-ced21a209358
Merge pull request #46 from sgibb/typo

fix little typo in the vignette

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@86536 bc3139a8-67e5-0310-9ffc-ced21a209358
update version and NEWS

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@86537 bc3139a8-67e5-0310-9ffc-ced21a209358
fixed conflicts

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@86800 bc3139a8-67e5-0310-9ffc-ced21a209358
Merge branch 'master' into local-hedgehog

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@86977 bc3139a8-67e5-0310-9ffc-ced21a209358
rewrite searchGrid and subroutines to decrease runtime
adapt findMSeEMRTs to new findRtIndices and findMSeEMRTMatches
add NEWS entry
fix grd2 calculation
modify to new biocViews to DESCRIPTION file



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@87035 bc3139a8-67e5-0310-9ffc-ced21a209358
fix multiple match calculation
revert wrongly commited change
add NEWS entry
replace not by non
Merge pull request #50 from sgibb/gridSearch

Optimize gridSearch2 (and fix a bug in the calculation of non unique matches)
version mess
fix conflict

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@87115 bc3139a8-67e5-0310-9ffc-ced21a209358
new devel version