ignoring .vagrant directories
creating new setup for bamutil
removed blank lines
changed from public to private network
reduced memory and cpu footprint
jellyfish build
changed to use private network
added logic to wrap and deploy java jars into sh scipts
fixed java command to include args and made it a bash script
switeched over to private network
Adding more text to the README file.
replaced gkno template with commands for samtools. This is untested.
added ftp download of tarball to bootstrap.sh