Revert "deleted:    ExampleProject/ExampleProject.h5"

This reverts commit 7e399749f9e3393df25af9de918270c5d5b276fe.

new file:   tests/mock/ExampleProject/ExampleProject.h5
new file:   tests/mock/ExampleProject/JT/input/illum_correct.handles
new file:   tests/mock/ExampleProject/JT/modules/illum_correct.m
new file:   tests/mock/ExampleProject/JT/modules/read_filenames.py
Many interesting things happened :) /yy
Mainly, each 3 languages have nice similar API (R is almost there).
We switched from JSON to YAML.