removed comment from bamutils count header - makes it difficult to import into R.
don't try to iterate on a string
for some reason bwa made a BAM file with a start pos == -1. That's not right... so, we'll ignore those.
modifications to better deal with tags
Merge branch 'master' into working
rewrote properpairs to sort the inputs on disk and read pairs that way... it might be faster
Merge branch 'working' of ssh://github.com/ngsutils/ngsutils into working
added support for user-defined tmpdir
usage doc update
tmp files are now compressed
doc update
added TODO
chunk 1M reads at a time, this will reduce the number of temp files 10X
Merge branch 'working' of ssh://github.com/ngsutils/ngsutils into working
removed comment from bamutils count header - makes it difficult to import into R.
don't try to iterate on a string
modifications to better deal with tags
rewrote properpairs to sort the inputs on disk and read pairs that way... it might be faster
added support for user-defined tmpdir
usage doc update