Merge of the filename changes in develop into CustomGenerator.  Seems OK.


Former-commit-id: 52acd20f97c4604b9550f28062050c354cd047ed
Commit of remaining files from merge with develop branch


Former-commit-id: 44676fbcdde32d19a6b6c1eac356c421504a3f66
Added print statements that indicate IP progress


Former-commit-id: 5cd54d4d16815cf5ede68c09e5bde2bd9023e1f2
Commit of documentation remaining from merge with develop


Former-commit-id: 6d18e160fe8e65fa8b481e36a6137920ee62c380
Merge branch 'feature/various_cleanup' into develop


Former-commit-id: 00dbf3507784ffa16ea3498587b7b528d4c2dc86
Large batch of file renames.  I have attempted to change the code and init files where ever possible, but have no doubt missed some.


Former-commit-id: ac22cdb3b6177076d9f00873dd08f0dd4f35cc83
Merge branch 'develop' into feature/CustomGenerator


Former-commit-id: e3f5cd8c3f5a00ecdde0c08d78f140b5de2e1dc9
Rename of ALG folder to Algorithms


Former-commit-id: 16389aa6a1664bad742dd65259ad0a68874a1ec1
Rename of GEN folder to Generators


Former-commit-id: ea43cf59b782a5b18679ac5d777c19aa1826298a
Rename of folder BAS to Base


Former-commit-id: 41ef09a055ed8f3a712baa7fde58cb18491a5116
Rename of folder NET to Network


Former-commit-id: ad8e3ad365368dc47ed4797a24074f0ebf09cdb6
Rename folder VIS to Visualization


Former-commit-id: 3ecd766c4d7e043f70d3d530983cc56de4bfc217
Update of code to reflect renaming of folders.  I searched in all files, so hopefully didn't miss any.  My run_script works, so I got most at least.


Former-commit-id: 6fc87fa824111a8479c4418e1c62335d5e829d37
More deletions/renames


Former-commit-id: daf303a40a89b512a94a751cb8ab63c7a5096028
Merge of file/folder/module name changes in develop onto PhysicsModule feature


Former-commit-id: 7f8f82b90969d490c07edef22ede26bfdd4e0e28
Rename of PHYS to Physics on the PhysicsModule feature branch


Former-commit-id: 8ead4c8daa0583342a4b0581be9595264334c0d4
Merge branch 'develop' into feature/CustomGenerator


Former-commit-id: 98fe7021ef0382faab7e7688d1fd76b290432d66
IP algorithm now has the toggle of timing='OFF' or timing='ON' to turn off or on the Haine's jump logic.


Former-commit-id: 42d61fc7c2eb55e06ca55e165d7d1888a7e74963
Documentation updates


Former-commit-id: 612e33e7da8fd7be7baf3bb49f1ed5222023621c
Code written for importing from mat (OpenPNM.Generators.ImportMat). Still need to document required file formats.


Former-commit-id: 1c85ad651b74dfe1faa4ce286178088abdf76185