Added missing CDMS pages, started reformatting ch2
Changed our markdown parser to kramdown
About 2/3rds of the way through cleaning this guy up
Chapter 2 Reformatted to Markdown
Reformatted chapter 3 of the CDMS manual
Added initial scrape of VCS, and updated default template to support files in folders, rather than cramming everything into root.
Merge branch 'gh-pages'