Added SelectVariants 'L' and 'env' flag
Rewrote removeRedundantFiles
Add some more files to RemoveRedundant
Merge branch 'release/v.1.5.1'
Added UseLargePages option for java Runtime environment
Minor change
Minor changes
Added temp directory for PicardToolsMarkDuplicates
Minor change
Minor changes
Added UseLargePages option for all GATK modules
Minor changes
Fixed GATKHaploTypeCallerRefBAMInfile flag for genomes and rapid analysis.
Fixed GATKExomeReferenceSNPs for genomes and exomes
Removed GATKTargetPaddedBedIntervalLists requirement for "genomes" analysis, added -L contig for GATKHC
Added version print to log and terminal
Merge branch 'release/v1.5.2'