abyss: modernize autotools deps
adol-c: modernize autotools deps
beagle: modernize autotools deps
fastx_toolkit: modernize autotools deps
hmmer: modernize autotools deps
minc: modernize autotools deps
moab: modernize autotools deps
mrbayes: modernize autotools deps
openni: modernize autotools deps
sga: modernize autotools deps
snp_sites: modernize autotools deps
z3: modernize autotools deps
emboss: modernize deps
enblend-enfuse: modernize deps
h5utils: modernize deps
insighttoolkit: modernize deps
mathgl: modernize deps
opencv: modernize deps
paraview: modernize deps
pocl: modernize deps