Update dbNSFP to 2.6. Fixes #181
Fix retrieval of hg19 information from Broad bundle, which has recently changed file naming. Thanks to Jeff Kittrell
Support Psuedomonas genome build
Add pindel and non-head seqtk to current bcbio packages
Enable custom installs of brew bottles for difficult to build Linux packages. Add cmake to avoid Python dependency with Sphinx
Include bcbio-variation-recall in default tool install. Fixes chapmanb/bcbio-nextgen#594 Fixes chapmanb/bcbio-nextgen#584
Ensure homebrew Cellar exists before applying pre-built bottles. Fixes chapmanb/bcbio-nextgen#600
Avoid erroring out when attempting to cleanup build space after successful build. Fixes chapmanb/bcbio-nextgen#601
samtools 1.x is now the default in homebrew, skip looking for --devel versions and packages. Thanks to @mjafin
Remove seqtk as HEAD build and instead use latest version that is up to date. Ensure we use --env=inherit for HEAD builds in the future. Thanks to @mjafin for report
Avoid using yolk for manifest creation if not installed. Thanks to @etal
Install mm10 LCR input file along with other variation resources. Thanks to @brentp
Use the python executable the script is called with.
Merge branch 'master' into nmdp-ngs-pipeline