Improve fingerprinting of documents

Fixes two issues:
- #4456 : The first 100 bytes are often not unique as they can be
filled with standard PDF headers - so we use the first 200 KB instead.
(This may be overkill)
- Some documents we encountered have invalid xref ids, which were
always coming out as ‘0000000000000000’ - so we detect that and use the
MD5 instead.