maximum_displacement option for 3D volume translation
Merge pull request #44 from pkaifosh/3D-bounds

maximum_displacement option for 3D volume translation
Reordered argument doc list to match actual argument order.
Fix for large datasets hanging whole_frame_alignment
fixes for 3D extraction summary pdf

NOTE: Pools currently hang
Fix for large datasets hanging extraction pools. Added chunksize limit.
Now pass frame index in to the workers so they can be read-out unordered.
adapted imaging parameters to Prairie v5.2
memory improvements for motion correction of large datasets
memory still overloads when using pools
Merge branch 'master' into nathan_3D_extract_fix
Merge pull request #48 from nbdanielson/master

memory improvements for motion correction of large datasets
Merge branch 'master' into nathan_3D_extract_fix
Fixed issue #50: os.path.samefile not in Windows
Fixed whitespace
Merge pull request #51 from tamachado/master

Fixed issue #50: os.path.samefile not in Windows
Bug fixes for motion corrected sequence class
Refactoring of 2D HMM and work on 3D HMM.

Tests pass.
Working 3D HMM, though still contains rough hacks.

2D tests still pass. 3D displacements reasonable.
trim_coords for 3D displacements
Fixed exporting of frames.
Merge pull request #52 from pkaifosh/3D-HMM
Minor fix to sequence.py

Missing type cast caused motion correction to fail on Windows