Merge branch 'master' of github.com:revbayes/code
Added the printing of expected time to the completion of the analysis to ScreenMonitor. Changed Iteration to Cycle in the printing of MCMC output. First couple of steps in revising the DAG node implementation.
Merge branch 'master' of github.com:revbayes/revbayes
Merge branch 'development'
adding simulation support
overhaul for bg ch simulate()
prevent delete if v==value
bg sim updates
Merge branch 'development' of github.com:revbayes/revbayes into development
Added uniformization proposal and test module
Changes to .gitignore
Merge branch 'development' of github.com:revbayes/code into development

Conflicts:
	.gitignore
formatting ...
Printing by default the likelihood, posterior and prior to the screen.
Corrected RateMatrix_FreeBinary and debugged some remaining issues in PUSP.h
Merge branch 'development' of github.com:revbayes/revbayes into development
Added basic (untested) class for RateMap_AminoAcid
added TeX for the relaxed-clock tutorial, minor mod to preamble
Merge branch 'development' of github.com:revbayes/code into development
Added basic AminoAcidRateMapFunction.* (also untested, but compiles)