Commit made by the Bioconductor Git-SVN bridge.
Consists of 2 commit(s).

Commit information:

    Commit id: 8983a97f2d197ddac51c802df02aa061302269bd
    Commit message:
    Add BiocCheck man page, cleanup

    add, export usage() function
    pass R CMD check and BiocCheck
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-06T17:16:04-08:00

    Commit id: 0d1db5b0bcbc6c84ffe590e745b2b24283ab0b4f
    Commit message:
    Merge branch 'master' of https://github.com/Bioconductor/BiocCheck
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-06T17:16:46-08:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiocCheck@86197 bc3139a8-67e5-0310-9ffc-ced21a209358
Merge branch 'maindev'
Commit made by the Bioconductor Git-SVN bridge.
Consists of 2 commit(s).

Commit information:

    Commit id: 04f50f001f8042ff79969f457b225ada55eb8f20
    Commit message:
    be more neutral in vignette
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-07T09:33:41-08:00

    Commit id: f7d471745ef33f4db35956e8e62ce02e0f8b35a9
    Commit message:
    Merge branch 'maindev'
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-07T09:34:11-08:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiocCheck@86215 bc3139a8-67e5-0310-9ffc-ced21a209358
Merge branch 'maindev'
Commit made by the Bioconductor Git-SVN bridge.
Consists of 4 commit(s).

Commit information:

    Commit id: ff21a51093e19b467cbebeb76991dcfeaa45b602
    Commit message:
    demonstrate interactive use
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-07T09:37:16-08:00

    Commit id: 09011f89412f48c510a3ec9e61d2e84f381b375c
    Commit message:
    more notes about BiocCheck vs check
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-07T09:42:17-08:00

    Commit id: 7b322a79378655d47e7a68cfd7a595a2a8cf63b6
    Commit message:
    When checking tarball, allow vignette sources in inst/doc (demote to NOTE)

    This is ok because "R CMD build" puts vignette sources in
    inst/doc. It's not wrong and there's nothing the user
    can do about it, but we NOTE it all the same.

    However, if the user is checking a directory, not a tarball,
    we make this a RECOMMENDED issue.
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-10T12:19:18-08:00

    Commit id: 38f8eeb5331018b23be192c3bfeadf79f6500070
    Commit message:
    Merge branch 'maindev'
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-10T12:20:33-08:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiocCheck@86283 bc3139a8-67e5-0310-9ffc-ced21a209358
use dirname instead of sub when deriving lib dir
Merge branch 'master' of https://github.com/Bioconductor/BiocCheck
Commit made by the Bioconductor Git-SVN bridge.
Consists of 2 commit(s).

Commit information:

    Commit id: 55de430e221c35f7f44d6a843f18cf34a8dc8349
    Commit message:
    use dirname instead of sub when deriving lib dir
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-10T14:59:23-08:00

    Commit id: 488f7d0c5c69b9f1b5540c1ad7a80c49abf53cda
    Commit message:
    Merge branch 'master' of https://github.com/Bioconductor/BiocCheck
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-10T14:59:50-08:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiocCheck@86300 bc3139a8-67e5-0310-9ffc-ced21a209358
Apparently on windows a package must be 'really' installed
(in binary fashion) before you can call getNamespace() on it.
Commit made by the Bioconductor Git-SVN bridge.
Consists of 1 commit(s).

Commit information:

    Commit id: 2fafa5e6c0c8ed663a4b14e8d3d5ba3375d6b436
    Commit message:
    Apparently on windows a package must be 'really' installed
    (in binary fashion) before you can call getNamespace() on it.
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-10T15:45:21-08:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiocCheck@86304 bc3139a8-67e5-0310-9ffc-ced21a209358
fix syntax error
Commit made by the Bioconductor Git-SVN bridge.
Consists of 1 commit(s).

Commit information:

    Commit id: 85129f57493cd1998fe7670076fb7cb4a989ed38
    Commit message:
    fix syntax error
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-10T15:54:33-08:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiocCheck@86306 bc3139a8-67e5-0310-9ffc-ced21a209358
Use usage() in vignette to produce usage message
Merge branch 'master' of https://github.com/Bioconductor/BiocCheck
Commit made by the Bioconductor Git-SVN bridge.
Consists of 2 commit(s).

Commit information:

    Commit id: 33bf90754558a98c0f32fcf231acd92564380a9f
    Commit message:
    Use usage() in vignette to produce usage message
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-10T16:06:54-08:00

    Commit id: 4943924b3c1919bf51902d8f89b29eb84659947b
    Commit message:
    Merge branch 'master' of https://github.com/Bioconductor/BiocCheck
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-10T16:07:07-08:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiocCheck@86308 bc3139a8-67e5-0310-9ffc-ced21a209358
Fix exit code--should be 1 only when .requirements$getNum() > 0
Merge branch 'master' of https://github.com/Bioconductor/BiocCheck
Commit made by the Bioconductor Git-SVN bridge.
Consists of 2 commit(s).

Commit information:

    Commit id: d97988fb1458bbc761b7a173187f440a09942790
    Commit message:
    Fix exit code--should be 1 only when .requirements() > 0
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-11T10:33:07-08:00

    Commit id: 7f74d6824e9900dd588d0e10b89ceabd1df9d8f0
    Commit message:
    Merge branch 'master' of https://github.com/Bioconductor/BiocCheck
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-11T10:33:37-08:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiocCheck@86323 bc3139a8-67e5-0310-9ffc-ced21a209358
Implement a suggestion from Martin on interpreting output of getDLLRegisteredRoutines()
Merge branch 'master' of https://github.com/Bioconductor/BiocCheck