Consolidates dataframe building in R
Normalization factor calculation
Consolidate prepare and formatting for STEM
Put variables for input/output files
Adjust all STEM export/import functions
Adding some modified and missing files
Fix new filenames
Scatter plots are ok
Consolidates edgeR test for differential expression
Adapt plot script to helper function
Build plots for STEM profiles, stem 8
Fixes file paths to plots
Script to prepare profile transcripts for plots
Build plots for relevant STEM profiles