[FIX] added pause waits
[FIX] clean up, reenabled tests
[FIX] fixed travis
[FEATURE] added optimized implementation for fixed-size queues (Queue<.., Limit>)
[FIX] full output in ctest
[FIX] manually install libstdc++-4.8
Merge branch 'feature/parallel-queue' of https://github.com/weese/seqan into feature/parallel-queue
[FIX] reenabled all tests
[FIX] reenabled clang
[FIX] removed warning
update
[FEATURE] Initial commit of dynamic gap costs.
[TEST] Adds tests for and extends interfaces to set dynamic gaps from outside.
[FIX] fixed code review comments
[FIX] Fixed compiler warnings for unused typedefs.
Merge remote-tracking branch 'upstream/develop' into feature/dynamic_gap_costs

Conflicts:
	core/include/seqan/align/local_alignment_banded.h
	core/include/seqan/align/local_alignment_unbanded.h
[FIX] Fixes dp formula for dynamic gaps.
[INTERNAL, API] Adds support for dynamic gaps for all alignment algorithms. Adapts some global alignment interfaces.
[FIX] fixed code-review remarks
Merge pull request #418 from holtgrewe/hotfix/app_tests_normalize_crlf

[HOTFIX] Normalizing line endings by default in app tests. (master)