Issue #969: Phenotype details' subcategories should be collapsible.
Issue #969: Phenotype details' subcategories should be collapsible.
Small fixups.
Issue #923: No cancel button in export dialog.
Issue #930: Add support for collapsed/refinable subcategories.
Added new Java class for conditional sections. Changed the behaviour of yes/no/na pickers to expand terms, if forced expansion is allowed.
Commented out a line of code causing a bug, which could potentially introduce other bugs.
Issue #923: No cancel button in export dialog.
Put the files into distribution/war.
Merge pull request #992 from phenotips/issue-923

Issue #923: No cancel button in export dialog
Issue #1001: Change the message displayed when starting the standalone server to be more specific to PhenoTips
Done.
Also removed the rest of the informative messages, and added shutdown notifications.
Issue #1005: Useless log warning about "No stored data found for /rest/managed" displayed when starting PhenoTips
Fixed.
[misc] Speed up patient creation by skipping the Monarch score computation
[cleanup] Applied codestyle
Issue #923: No cancel button in export dialog
Added optional onCancel behavior for the widget
Issue #917: Exception displayed in the logs when drawing a pedigree
Fixing XWiki old code, buggy when used through REST. Tests need to be updated
Issue #1004: RPM package doesn't install on systems with Tomcat7
Created phenotips-tomcat6 and changed the default RPM to depend on versionless "tomcat"
Other changes:
- moved the webapp from /var/lib/tomcat/webapps to /var/lib/phenotips/webapp, registered now using a context file
- added a dependency on "bc" which was used in the postinstall scriptlet
- upgraded to rpm-maven-plugin 2.1-alpha-4 (and renamed "copyright" to "license" in the configuration, since this is the preferred name in alpha-4)
Issue #868: Pedigree not scaled to page width in patient record
Added a migrator that fixes existing pedigrees broken before #556
Issue #1007: Invalid SVG generated by the pedigree editor
Fixed.
Issue #923: No cancel button in export dialog
Cleaner fix, works without appending ?minify=false in the URL.
[misc] Fixed typo, removed redundant comment
Issue #1008: Make the standalone package detect Java correctly in more cases on Windows
Done.
[cleanup] Removed no longer needed code
Issue #917: Exception displayed in the logs when drawing a pedigree
Fixed tests + minor update