new file
The first commit (Tutorial session by SJ)
added CDMI handling for looking protein sequences from MD5 ids.  Testing input data connection.
Test of CDMI retrieval of protein sequences given MD5s
added preloading of pdb.md5.tab and checking md5s vs that table.
changed output to tabular (list of hashes) structure.
First pass at BLASTP searches for near matches.
Tabular output for prst-lookup-pdb-by-md5.pl
trying to resynch with server, copied KBaseProteinStructureImpl.pm to laptop
to try to help merge
adding feature id type and new lookup_pdb_by_fid() function to type compiler spec.
will upload and then continue on magellan server
resynching with master
added lookup_pdb_by_fid functionality, restructured a lot of subroutines, added comments.
added prst-lookup-pbb-by-fid.pl
fixed typo
forced type conversion of percent_id- javascript was getting it as a string.
Getting ready to try a real deployment.  First updating the DEPENDENCIES file
added pdb subdirectory with basic make file to generate needed
files (including blastp indices) starting from pdb_seqres.txt.gz
(which is now included as part of the distribution, along with
instructions on how to update it)
hmm the git commit --all didn't get the pdb directory
now it goes in.
including .gitignore from now on as well
removed SHA1 library use in pdb/create_md5_pdb_id_mapping - wasn't
used and was not in the KBase perl5lib env.