Trans-ABySS 1.5.1 source code
modified format/header of README and TUTORIAL
fixed sample dataset test script
Update README.txt

Fixed the example `pip' command for installing `python-igraph'
fixed readme. update reference path to walk into low mean k-mer coverage regions. added a checkpoint for assembling reference paths.
skip the tracking of a few file extensions.
untrack a few files added accidentally.
New makefile for installing prereqs. Fixed a bug in the cluster job scripts created by transabyss-analyze. Option to not include reference paths in the final assembly.
Merge branch 'master' of https://github.com/bcgsc/transabyss
fix typo
Fixed bug when accessing the first item in an empty list. Replaced tabs with spaces.
Removed extra colon.
The annotations directory is propagated correctly to different modules.
fixed typos
resolve conflict
change output analyses directory names to match the option names
Merge branch 'master' of https://github.com/bcgsc/transabyss