minor changes due to procesing new dataset
minor changes due to processing new dataset
Adjust arguments for xsq2clonality: obtain purity from DB, fixed *seg directory
Adjusting arguments for xsq2cnCorr: get purity from DB
minor changes due to processing new dataset
Wrapper for clonality pipeline
Automation script for post-processing WXS pipeline(mut,copynumber,purity,correction,clonality)
Argument change: get purity from DB
Chromosome-wise copy number plot
minor change in path to ngCGH binary
minor changes due to processing new dataset
minor changes due to processing new dataset
changes to clonality pipeline:
- gets purity from DB
- calculates clonality for rejected variants, too
- outputs copynumber for the location
minor change due to processing new dataset
Changes due to processing new aCGH data
added functions to manipulate tables at post-processing steps
New global variables regarding repositories for pipeline outputs
minor changes in print format
minor changes due to processing new dataset
minor changes due to processing new dataset