added methods for storing illumina RunInfo.xml and parsing trim_galore output
test of first trim_galore
Merge branch 'develop' into trimGaloreStats
fixed npe and don't retry on missing file.  added ls to attempt to fix stale NFS issue.
minor clean
added 'reverse' option to plot axes, fixed unchecked exception from plugins
working implementation of trim_galore stats
Merge branch 'develop' of http://frankfurt.aecom.yu.edu/git/wasp/blessedRepository into develop
cleaned up imports
added fixes for handling paired end and testing with data in alternative location
shortened trim galore names
truncated step / flow names for fastqc and fastqscreen too
updated names
further fixes to input file pathname
hopefully final fix
trim test
Merge branch 'develop' of http://frankfurt.aecom.yu.edu/git/wasp/brent into develop
* New plugin for generic file viewing
Merge branch 'viewTxtPdfImg' into develop
fixed minor typo