Commit made by the Bioconductor Git-SVN bridge.
Consists of 7 commits.

Commit information:

Commit id: 3db6f5a878e580cc0c16e21cff07be4ec74eed7a

    Suggest the testthat package.

Committed by: Sebastian Bauer
Author Name: Sebastian Bauer
Commit date: 2014-10-04 13:09:46 +0200
Author date: 2014-10-04 13:09:46 +0200

Commit id: 05b0eafa74c4ea4affcd977808989cb76e77bca0

    Merge branch 'fix-subset' of https://github.com/alyst/mgsa-bioc

Committed by: Sebastian Bauer
Author Name: Sebastian Bauer
Commit date: 2014-10-04 12:48:25 +0200
Author date: 2014-10-04 12:48:25 +0200

Commit id: b445099dc2566d2b6e3d1571a5511383d05710e5

    draw lines in parameter distribution plots

Committed by: Alexey Stukalov
Author Name: Alexey Stukalov
Commit date: 2014-10-01 22:21:34 +0200
Author date: 2014-10-01 04:50:37 +0200

Commit id: 123ab516fa69d5e788b8e71b5992a0e69ae2b6ad

    add subMgsaSets test

Committed by: Alexey Stukalov
Author Name: Alexey Stukalov
Commit date: 2014-10-01 22:21:09 +0200
Author date: 2014-10-01 04:50:37 +0200

Commit id: f30d5a7b430062d3043d2e6434a93557553d6420

    add tests infrastructure using testthat package

Committed by: Alexey Stukalov
Author Name: Alexey Stukalov
Commit date: 2014-10-01 22:20:44 +0200
Author date: 2014-10-01 04:50:37 +0200

Commit id: 47a05256b249a8d4a7d946de54b73e644f5a9e47

    enhance getting item/set annotations

    - require exact name match
    - always return data frame
    
Committed by: Alexey Stukalov
Author Name: Alexey Stukalov
Commit date: 2014-10-01 22:20:07 +0200
Author date: 2014-10-01 04:50:37 +0200

Commit id: 180ec937d3c8c54f6e2e68483cd709ede6c6cdee

    fix subMgsaSets()

    - items parameter is a character vector of ids
    - original item ids are preserved after subsetting
    - item and set annotations are preserved
    
Committed by: Alexey Stukalov
Author Name: Alexey Stukalov
Commit date: 2014-09-18 01:42:59 +0200
Author date: 2014-09-18 01:42:59 +0200


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mgsa@94980 bc3139a8-67e5-0310-9ffc-ced21a209358