Multiple changes: 1) Added a -S option to skip frames by changing how they are incremented when calculating the average in the calc_average function.  2) When you give frame numbers in the input data/xvg file, it will specifically pull information from those frames.  This allows the user to skip frames non-uniformly.  3) When frames are missing, the frame probability is no longer equal to bin_frame / (# of times bin_frame is visited in total simulation).  Instead of is bin_frame / (# of times bin_frame is visited in dataset).  This means that a highly probable bin which was only visited once in a limited dataset is much greater than before.
Ignoring a tmp file
Ignoring a tmp file
bw_wham will tell you if you give it an empty xvg file
Simplified vector assignments and changed most functions from pass by value to pass by reference (const reference where appropriate)
Minor change to Makefile, copy executable binaries instead of moving them
trying to figure out why this doesn't work...
adding individual makefile for bw code which i use for testing
Fixed the memory bug; wham_args.omegas[nexp][nstates] was previously allocated as [nexp][nexp], which is too small and caused memory to to used for the vector which was allocated for something else
Working version of the changed I've makde
merging changes onto master and pushing
Merge branch 'master' of https://github.com/webbgroup-physical-chemistry/wham

pulling from server befor emerging
cleaning