Remove some dead code
Placeholder for BatchedModuleRunner, will need web service changes
Placeholder BatchedProvisionJob, enforcing one job attachement per SqwFile, and adding comments for my sanity to WorkflowApp
Refactor for my understanding
Prototype implementation of batched provisioning
Improve naming of jobs
Fix batching of unattached provision out
Implement a locking mechanism for Runner, allowing for batched retry, and fixing naming scheme
Fix null case
Change mutation
Fix metadata processing accession
Add compatibility with Java 7 targeting a Java 6 source
Prototype for naive batching
Activate memory controls for job batches
Merge pull request #175 from SeqWare/feature/provision_out_batching

Feature/provision out batching
Merge pull request #176 from SeqWare/feature/naive_job_batching

Feature/naive job batching
Fix parameter reading and disable probably unintended memory-intensive caching behaviour
Merge pull request #177 from SeqWare/feature/workflow_runtimes

Fix parameter reading and disable probably unintended memory-intensive caching behaviour
Fix formatting
Merge branch 'develop' of github.com:SeqWare/seqware into develop