Only copy the atomic attributes when creating a MapEntity from another Entity
Merge branch 'master' of https://github.com/molgenis/molgenis into feature/data-api-annotators
add function to get the annotated entity based on annotation data and original entity
omx independent repository annotator
annotator should return an annotated entity with all its attributes, not a new entity with only the in- and output of an annotator.
fix EbiServiceAnnotatorTest, no longer need internetconnection
fix bug in annotate method of KeggServiceAnnotator
fix bug in annotate method of CosmicServiceAnnotator
fix annotator unit tests
remove omx from annotator pom
code formatting
disable "createCopy" checkbox in annotator UI
remove omx from molgenis-annotators pom
Changes to AnnotatorController to support the omx independent annotators
Merge branch 'master' of https://github.com/molgenis/molgenis into feature/data-api-annotators
Merge branch 'master' of https://github.com/dennishendriksen/molgenis into feature/data-api-annotators
Create interface for MetaDataParser and POJO for ParsedMetaData.
Use ManageableCrudRepositoryCollection for the target of the import.
Use auto-generate to generate ParsedMetaData implementation.
Use immutable bean for the report.
First test.
Make ImportWriter stateless so it can be reused.
Inject writer and its dependencies into the EmxImportService.
Now the @Transactional annotation should work fine on the ImportWriter.
Let the parser parse the package list as well.
Depend on ManageableCrudRepositoryCollection, nothing Mysql specific in the EmxImportService left.
Introduce parameter object for the import job.
Introduce bean for the MetaDataChanges.
Copy parser integration tests to parser unit test.
Javadoc.
Add empty sheets when importable entity gets added.