Put SNP distribution/variation in /note of GFF output
Check and die on no input files
Add --mapqual option to only use Q60 mapped reads ie. good BWA-MEM alignments
Add --maxdepth option to possibly exclude repeated regions in future version
Add RG to output BAM file to differentiate samples
Major update: remove unused tools
Update linux binaries
Include new linux binaries needed
New scripts (not architecture dependent)
Major update: pre-release 2.0 version, massive changes
Ignore backup folder