Update develop submodules

Repository: openmicroscopy/openmicroscopy
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Repository: openmicroscopy/bioformats
Updating 1657654..a521a89
Merged PRs (fast-forward):
  # PR 995 rleigh-dundee 'C++ sphinx documentation'
  # PR 992 rleigh-dundee 'C++: Enable stricter warnings'
  # PR 994 melissalinkert 'InCell: fix NPE when parsing Z positions (rebased onto develop)'
  # PR 986 imagejan 'Make macro recording work with Exporter'
  # PR 996 rleigh-dundee 'C++ Update copyright dates for 2014'
  # PR 982 melissalinkert 'Fix the download URL for stable release jars (rebased onto develop)'
  # PR 975 rleigh-dundee 'cpp: cmake: Don't enable -pedantic if it breaks long long use'
  # PR 973 rleigh-dundee 'C++: Fixes for the OME-XML model and metadata store interfaces'
  # PR 970 rleigh-dundee 'C++: Add FormatReader implementation'

Repository: ome/scripts
Updating 1878321..356b81f
Merged PRs (fast-forward):
  # PR 73 sbesson 'Fix scripts to comply with PEP8 1.5.0 (rebased onto develop)'

Repository: openmicroscopy/ome-documentation
Updating 7a0521c..fd4b617
Merged PRs (fast-forward):
  # PR 709 will-moore 'Homebrew install edits'
  # PR 707 hflynn 'Updates to sysadmin installation docs (rebased onto develop)'
  # PR 706 hflynn 'Update C++ job descriptions'
  # PR 704 sbesson 'Move schema changes to the contributing documentation'

Generated by OMERO-5.1-latest-submods#66 (http://ci.openmicroscopy.org/job/OMERO-5.1-latest-submods/66/)
Merge pull request #2177 from chris-allan/12097-socket-timeout

develop: Update upgrade check handling in OMERO.web
customizing 'Orphaned images' container
add comment to settings.py
Add slf4j dependencies to OMERO.matlab toolbox
Add getOmeroJars() function to list toolbox JAR dependencies

Include a conditional inclusion of the slf4j-api and slf4j-log4j12 JAR files
for versions of MATLAB older than R2011b.
Fix javarmpath() command in unloadOmero()

For some reasons, javaaddpath() supports a cell array while javarmpath()
does not. This commit unifies the behavior by passing the jars as multiple
elements to both functions in loadOmero() and unloadOmero().
Apend omero_client to the list of JARs to load
Use cellfun to add/remove JARs to the dynamic Java class path

For some unknown reason, javaaddpath(omeroJars{:}) does not work on the CI
node (effectively adding the first JAR only). This commit should fix the behavior by encapsulating the javarmpath/javaddpath calls using cellfun().
Ship log4j.jar with OMERO.matlab and add it conditionally to the Java path

This commit refactors the getOmeroJars() logic to rely on the Java class path
rather on hard-coded versions of MATLAB. The log4j and slf4j dependencies are
assessed independently.
fix 11965: join images to plate runs for leaf queries
removing unused file
Search by ID. See #12151
Link from search results to each object
Merge pull request #2189 from dominikl/projects_disappear

Bugfix: Weird behaviour after switching users
Merge pull request #2191 from mtbc/model-changes

fix #11663, #11664, #11877: SQL DOMAIN; import logs (rebased); FS delete log trigger
Merge pull request #2192 from ximenesuk/fix-duplicate-pixids

Check for duplicate pixels IDs when adding to list.
Merge pull request #2202 from snoopycrimecop/merge/develop/submodules

Update develop submodules (regular submodule bump)
Merge pull request #2216 from knabar/flake8-cleanup

OmeroWeb flake8 cleanup of most severe warnings
Merge pull request #2217 from dominikl/importer_focustraversal_problem

Bugfix: UI elements accessed outside of EDT (ImporterAgent)