existing_matrix option modified to accept path, modified the core method to check for existing_matrix option and if given will execute read_existing_matrix_data
Untested read_existing_matrix_data method
Modified API to support gen/regen/d3js options'. Modified regen so that it calls read_existing_matrix_data method and generates a figure
Merge branch 'master' of https://github.com/mscook/SeqFindR
Added option in generate to compress the figure
Made read_existing_matrix_data general & added data saving in plot_matrix
Maintain bleedthrough
save the matrix and also keep top 2 blank rows
Merge branch 'master' of github.com:hamzakhanvit/SeqFindR
Added stub to compress blank columns out of the matrix. Updated prepare_queries for this as it returns a lookup matrix
Reminder for Monday
build_matrix_classrow and compress_matrix
Added required funtionality for plotting compressed matrix
Added compressed option to regenerate and some general bug fixes
Merge pull request #26 from hamzakhanvit/devel

Save data, regen data & compress matrix

Note -closed #25 and am using this fully functional codebase.

Consists of-
* restructuring the SeqFindR call into 'generate, regenerate and d3.js'
* modified generate to write out data needed for regeneration
* added regenerate method to read stored data and reproduced plots
* compressing the matrix (removing the blank columns)