Partial update, oxDNA import and export coming up. Not ready yet though.
Since exporting to oxDNA is destructive (data is lost) an additional .vhelix file is created to glue the vHelix representation with the oxDNA one. After a simulation is finished, in order to import the result, this .vhelix file must be available, with the same filename as the .conf and .top files. With these 3 files, it will be possible to import oxDNA simulation results.
Note that the DAG hierarchy in Maya is thus kept, i.e. if a strand has left a Helix and attached a new one, it will still in the Maya/vHelix sense belong to the previous one. The importet oxDNA results should not be modeled upon, only viewed.

Build for Linux.