support for 'requires' at top level outside of pipeline definition
improve wording and display of error when required value is missing
inputs not being correctly checked to be provided when specified at root level
don't display exception info when failure is due to value missing from
specified inputs
fix to subject line
fix parameters passed in by command line not resolvable in templates
support 'send report(...) to file: <file name>' syntax
added new commands to default help display
make produce() with directory use that directory rather than coerce to
current output dir
fix test failing due to rewording of output
fix produce_existing test failure
Ensure full stack trace is logged in bpipe log when missing function encountered
fix blooper causing mass test fails
support for setting check message without failing or succeeding
explicitly (check.message = "...." in otherwise clause)
new check report to send / write a summary of all checks as HTML
documentation now available to reports based on user templates
"utils" now provided to templates for generic utilities (escape, todo:
documentation)
add executable permission
fix required inputs using exact path instead of file name
removed all forms of locking of R sessions (should now be unnecessary) as it can form a bottleneck in certain scenarios
fix output directory set by command line resulting in inputs not correctly recognised in 2nd and later stages of pipeline
switch to SimpleTemplateEngine because GStringTemplateEngine is not observing classpath of added libraries, only core groovy libraries
updated release notes for 0.9.8.6_beta_3
update for 0.9.8.6 beta 3
Add option to suppress -cwd parameter in Lsf executor
Merge branch 'master' of https://code.google.com/p/bpipe