build.B nick final

Notes added, indentation fixed.
Revert "build.B nick final"

This reverts commit f63a8f704e26ae2025d8b87964688b2ddbacf0a6.
build.B final commit, test

Notes and description added.

Testing commit after accidental revert.
Cov_suped.R final commit

Notes added
Indentation fixed
In building initial D.XX, matrix arguments of bdiag() have cor.level as
first argument, as opposed to a vector.
diag(D.XX) <- rep(1,matdim) changed to <- 1
G changed to X
big_sim_cutoff.R changes

Sources/libraries deleted
Some indentation changed
G switched to X
sample.sigma12.function Commit

Indentation changed
Notes added
Method of subtraction of column means from X and Y changed
scca.function Commit

Indentation changed.
Notes added
scca.multiple.R Commit

Indentation changed.
Notes added.
u.initial and v.initial arguments eliminated.
select.parameters.multiple.R Commit

Indentation changed.
Notes added.
X.data/Y.data changed to X and Y.
n.sample changed to n.obs
flag.na variable eliminated
sim_setup_noise_suped.R Commit

Indentation changed.
Notes added.
mu initial creation only needs 0 as first argument, not a 0 vector.
Loop that creates mu changed to G%*%B
var.cor changed to cor.level