Moved the vignette from the /inst/doc to the vignettes folder
Added the vignette to the inst/doc
CMD check has problems if the vignette is not on both in inst/doc and
vignettes - FML
Added session info to the GenomationManual-knitr.Rnw
DESCRIPTION: added GenomicAlignments package to imports
DESCRIPTION:
	- replaced whitespace with tab

NAMESPACE:
	- added import(GenomicAlignments)
scoreMatrix.R:
	- in ScoreMatrix - commented the example with the bigWig file
	  because it gives an error during check on Windows machines
scoreMatrix.R:
	- ScoreMatrix - removed the example with bigWig
/man:
	- deleted all .Rd files
genomation-classes.R:
	- AnnotationByFeature: changed weird documentation slots for hiearchica to slots
	that are present in setClass
	- AnnotationByGeneParts: changed hierachica to slots that are in
	  setClass

man:
	- .Rd files are newly built
*.Rd files for classes built after slot change in the class documentation
ToDo: deleted the file
DESCRIPTION:
	- changed description
DESCRIPTION:
	- changed description for bioconductor submission
Merge branch 'development' of git@github.com:frenkiboy/genomation into development

DESCRIPTION:
	maintainer was not proprely set - now correcte

Conflicts:
	DESCRIPTION
Merge branch 'development' of git@github.com:al2na/genomation into development

First merge with altuna-genomation
All rd files had nonobvious conflits - the code was the same in both versions.

Conflicts:
	genomation.Rproj
	man/ScoreMatrix-methods.Rd
	man/readFeatureFlank-methods.Rd
	man/readGeneric.Rd
	man/readTranscriptFeatures-methods.Rd
DESCRIPTION:
	- changed Version to 0.9.3
DESCRIPTION:
	- changed Version to 0.99.3.
GenomationManual-knitr.Rnw:
	- changed the install_github to biocLite in both files
GenomationManual-knitr.Rnw:
	- winows -> windows
DESCRIPTION:
	- removed the last comma from the version