Updating ADAM to 0.12.2-SNAPSHOT with migration to bdg-formats 0.2.0.
Merge pull request #95 from fnothaft/move-to-bdg-0.2.0

Updating ADAM to 0.12.2-SNAPSHOT with migration to bdg-formats 0.2.0.
[maven-release-plugin] prepare release avocado-parent-0.0.2
[maven-release-plugin] prepare for next development iteration
[avocado-9] Refactor pipeline structure to separate variant discovery and genotyping.
Merge pull request #96 from fnothaft/refactor-discovery-genotyping

[avocado-9] Refactor pipeline structure to separate variant discovery and genotyping
[avocado-99] Adds back external variant caller hook.
Merge pull request #103 from fnothaft/add-back-external-call

[avocado-99] Adds back external variant caller hook.
[avocado-105] Upgrades to latest ADAM snapshot.
Merge pull request #105 from fnothaft/upgrade-to-refactor

[avocado-105] Upgrades to latest ADAM snapshot.
[avocado-107] Upgrade to ADAM 0.14.1-SNAPSHOT.
[avocado-106] Moves to appassembler packaging and adds submit scripts.
Merge pull request #107 from fnothaft/adam-0.14.1-snapshot

Move to ADAM 0.14.1 SNAPSHOT and appassembler packaging
Merge remote-tracking branch 'upstream/master'