sorting out indentation

git-svn-id: svn://svn.r-forge.r-project.org/svnroot/qfa@599 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Removing unncessary linebreaks

git-svn-id: svn://svn.r-forge.r-project.org/svnroot/qfa@600 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Found a bug in the JHM_postpro function which converts qfa data to a format suitable for input into JHM MCMC inference scheme.  The bug resulted in extra observations being erroneously added  to timeseries and taken away from others.  Observations were not inserted in any particular order, and so timeseries were not sorted by time before inference.  Jonathan says that this is a requirement for success.  In any case, shifting data around like that means that the data input to the inference function (JHM_main) were incorrect.  I traced the problem to the funcXY_J function, which calls funcRowRep, funcColORF and funcARRAYTRANS_J.  There's minimal documentation or comments available for these and I can't quite see how they're meant to work.  So I have instead replaced them with a slower, simple loop through the data, which at least gives the correct output.  Also displays progress bar for the impatient.

git-svn-id: svn://svn.r-forge.r-project.org/svnroot/qfa@601 edb9625f-4e0d-4859-8d74-9fd3b1da38cb