+ Link-out to Araport home page from the AIP Logo in headMenu.jsp
+ Updated linkouts to TAIR in the `thalemine-static` data source
+ Add 6th column to `datasets.txt` to store version number for DataSets
+ Update `make-datasets-xml.pl` to parse version and to `datasets.xml`
Updated usage docs for the `make-datasets-xml.pl` script
- Removed warnmsg seen in JBrowse and eFP displayers on non-Ath gene pages
+ Update login text in login.jsp and InterMineWebApp.properties
Updated JBrowse displayer to locate feature by coordinates instead of identifer
+ Update confidenceRating and confidenceClass config in classDescriptions
+ Add missing "/" (causing redirects) to ${jbLink} var in jbrowseDisplayer
+ Modify warning message shown when requesting non A. thaliana report page
+ Modify BAR eFP warning message shown when requesting non Ath report page
Merge branch 'thalemine-1.0.0-release' into stable
added ability to put up info box on the home/begin page. this is triggered by setting the property, 'begin.preview.box' with the info text.
adds a few labels
Added gene flanking regions (.5kb, 1kb, and 3kb upstream & downstream).
Modified the postprocessing order so that create-gene-flanking-features comes before transfer-sequences otherwise flanking sequence won't be stored.
displays tair attribution (MINE-265)
fixes case when computational description does not have blast hits notation
changes tair header
+ Sync DataSet names (genome annotation, assembly) in project.xml with the datasets.xml
corrects capitalisation
adds external links to gene page
removes id from link display