Resolved the fact I want the repo to have production code, not development code
Consolidated code and made a more general begin step function (job objects now accept essentially the same things).  Also create MyConfigParser.
Added addiitonal sample sheet functionality.
Merged with the changes made to streamline the pipeline.
Fixed a bug in the safe_get function of the config and handled the logic in cp_result_back to work more intuitively.
Am in the process of fixing the cp_results_back module.
Integrated cp results back into pipeline
Debugging the new build.
Somehow I left off a file.
Added the working cp_result_back module.
Modified mockdb to now return None instead of a new object that has failed to be initialized.
Fixed a bug in cp_results_back.  Previous step should be CleanBcbio not Bcbio.
Tested casava integration.
Merge branch 'master' of https://github.com/billyziege/pipeline_project into devel