Merge pull request #1 from the-virtual-brain/trunk

Update from upstream
TVB-1469
Remove deprecated field NOSE_CORRECTION on Connectivity.
Data should come already rotated and in the same space for all surfaces/conn.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6275 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Merge pull request #2 from the-virtual-brain/trunk

Update fork
TVB-1406 Added a create_time_series factory method to monitors

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6281 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Merge pull request #27 from timpx/trunk

change equation_scientific for more idiomatic python and to accept ndarrays for var
TVB-1411: Fix tests after recent changes.
TVB-1446: Code review (place back commented monitor MEG)

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6285 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Merge branch 'trunk' of https://github.com/the-virtual-brain/tvb-library into trunk
Merge branch 'trunk' of https://github.com/the-virtual-brain/tvb-library into trunk

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6286 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Merge pull request #3 from the-virtual-brain/trunk

Merge changes in equation PulseTrain
TVB-1405
Code review:
- avoid storing temporary sparse matrix in H5, as it will be replaced soon anyway (in theory improves performance of this op)
- compute_sparse_matrix should really compute the matrix, not just the gdist and require a second compute step to be called

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6300 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1405
Replace temporary attribute with the usage of a local variable (to avoid memory allocation).

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6303 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Fix logger created from library profile.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6304 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Revert Github commit by @maedoc or we won't have logs from tvb-library profile.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6305 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Add range over Noise parameters at Tim's suggestion.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6306 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Fix recent wrong change in Cortex.compute_LC

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6308 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Fix LocalConnectivity related test after recent code change.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6309 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Make tests run faster, by modifying the input parameters in scientific computations and simulation lengths.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6310 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Added get_volume_view to timeseries volume framework
Merged with upstream
Corrected typo in comments