pushing breakpoint code not quite done yet
Pushing breakpoint finder
Breakpoints collapsed
Merge branch 'master' of git://github.com/cmhill/MetValidate into cmhill-master

Conflicts:
	src/py/all.py
Merge branch 'cmhill-master'
Added breakpoints to the new pipeline
about to undo some of my work
Pushing Bins
Breakpoints now output to gff
Moved SAMTOOLS out of bins
Also Depth of Coverage