Updates README file
Removed asserts
Progress bar display and report log files implemented
Merge branch 'develop'
Add \n in printf
README modify
Merge BWT with SA
SA and BWT integration in the same binary file
adapter.h/c added
Fixed some warnings
Modify to compile with -g option
Delete debug exit
Fixed warnings from tools
Fixed some warnings...
Merge branch 'develop' of https://github.com/opencb/hpg-aligner into develop

Conflicts:
	lib/hpg-libs
	src/bwt_server_cpu.c
	src/tools/bam/aligner/alig.c
	src/tools/bam/aux/aux_bam.c
	src/tools/bam/aux/aux_cigar.c
	src/tools/bam/recalibrate.c
	src/tools/bam/recalibrate/bam_recal_library.h
	src/tools/bam/recalibrate/data_collector.c
	src/tools/bam/recalibrate/recal_structs.c
	src/tools/bam/recalibrate/recal_structs.h
Merge fix
[BAM]Fix: Aligner reference load fixes
Warnings fixes
Merge pull request #1 from raulmorenogaldon/develop

Develop
Fixes chromosome lengths in sam/bam header and removes the optional field XC:Z