adding package.json for use with npm install
Merge branch 'master' of https://github.com/veg/hyphy
Removing misplaced symlink
Updating author
Updating author
temporary path fix
Merge branch 'master' of github.com:stevenweaver/hyphy
Merge branch 'master' of github.com:veg/hyphy
Merge pull request #234 from mdsmith/master

Fixed a (minor) convergence failure bug in BranchSiteREL.bf
Added the LF_SMOOTHING_REDUCTION env variable to control how rapidly the LF_SMOOTHING_FACTOR is driven to 0 (LF_SMOOTHING_FACTOR*=LF_SMOOTHING_REDUCTION after each optimization pass)
Merge branch 'master' of github.com:veg/hyphy
adding bayesgraph.ibf to help remedy issue #237 ("The left hand side expression does not contain an object reference in the following context..." when attempting BGM co-evolution analysis.)
Merge pull request #238 from stevenweaver/master

General organizational updates
adding HYPHY_PATH environment lookup
Merge pull request #239 from stevenweaver/master

adding HYPHY_PATH environment variable support
Adding `look_for_newick_tree` parameter to `io.getTreeString` to avoid being
prompted for newick trees within a multiple sequence alignment file.
Merge pull request #240 from stevenweaver/master

Adding `look_for_newick_tree` parameter to `io.getTreeString`