HTSJDK SamReader implementation using the API and example of its usage
Added ant build and updated HTSJDK
Addressing comments
Addressing comments 2
Merge pull request #2 from iliat/htsjdk-work

HTSJDK SamReader implementation using the API and example of its usage
Make sequence specification optional
Merge pull request #3 from iliat/htsjdk-work

Make sequence specification optional
Fix url format display
Moving to API beta2