Handle logging inside of docker containers using IPython: ensure hostname setup, propogation of output for debugging. Provide test script for IPython + docker
Update import tests for conda package with new parallel structure
Provide support for Torque parameter passing with -r resources flag. Fixes #280
Added single sample support and normal_panel vcf support to mutect
Merge pull request #284 from mjafin/master

Support STAR alignment disambiguation for mixed species samples. Thanks to @mjafin
Merge branch 'master' of https://github.com/mjafin/bcbio-nextgen
Merge branch 'master' of https://github.com/chapmanb/bcbio-nextgen