[ADAM-332] Upgrades ADAM to Spark 1.0.1.
Merge pull request #333 from fnothaft/upgrade-spark

[ADAM-332] Upgrades ADAM to Spark 1.0.1.
Added filterByOverlappingRegion to AdamRDDFunctions
Added the VizReads tool to CLI.

VizReads is a tool for interactive or static visualization of aligned reads along the genome.