[SPARK-2109] Setting SPARK_MEM for bin/pyspark does not work.

Trivial fix.

Author: Prashant Sharma <prashant.s@imaginea.com>

Closes #1050 from ScrapCodes/SPARK-2109/pyspark-script-bug and squashes the following commits:

77072b9 [Prashant Sharma] Changed echos to redirect to STDERR.
13f48a0 [Prashant Sharma] [SPARK-2109] Setting SPARK_MEM for bin/pyspark does not work.
(cherry picked from commit 731f683b1bd8abbb83030b6bae14876658bbf098)

Signed-off-by: Patrick Wendell <pwendell@gmail.com>
Streaming programming guide typos

Fix a bad Java code sample and a broken link in the streaming programming guide.

Author: Clément MATHIEU <clement@unportant.info>

Closes #1286 from cykl/streaming-programming-guide-typos and squashes the following commits:

b0908cb [Clément MATHIEU] Fix broken URL
9d3c535 [Clément MATHIEU] Spark streaming requires at least two working threads (scala version was OK)

(cherry picked from commit fdc4c112e7c2ac585d108d03209a642aa8bab7c8)
Signed-off-by: Tathagata Das <tathagata.das1565@gmail.com>
[SPARK-1097] Workaround Hadoop conf ConcurrentModification issue

Workaround Hadoop conf ConcurrentModification issue

Author: Raymond Liu <raymond.liu@intel.com>

Closes #1273 from colorant/hadoopRDD and squashes the following commits:

994e98b [Raymond Liu] Address comments
e2cda3d [Raymond Liu] Workaround Hadoop conf ConcurrentModification issue

(cherry picked from commit 5fa0a05763ab1d527efe20e3b10539ac5ffc36de)
Signed-off-by: Aaron Davidson <aaron@databricks.com>
[SPARK-2350] Don't NPE while launching drivers

Prior to this change, we could throw a NPE if we launch a driver while another one is waiting, because removing from an iterator while iterating over it is not safe.

Author: Aaron Davidson <aaron@databricks.com>

Closes #1289 from aarondav/master-fail and squashes the following commits:

1cf1cf4 [Aaron Davidson] SPARK-2350: Don't NPE while launching drivers
(cherry picked from commit 586feb5c9528042420f678f78bacb6c254a5eaf8)

Signed-off-by: Patrick Wendell <pwendell@gmail.com>
[SPARK-2307][Reprise] Correctly report RDD blocks on SparkUI

**Problem.** The existing code in `ExecutorPage.scala` requires a linear scan through all the blocks to filter out the uncached ones. Every refresh could be expensive if there are many blocks and many executors.

**Solution.** The proper semantics should be the following: `StorageStatusListener` should contain only block statuses that are cached. This means as soon as a block is unpersisted by any mean, its status should be removed. This is reflected in the changes made in `StorageStatusListener.scala`.

Further, the `StorageTab` must stop relying on the `StorageStatusListener` changing a dropped block's status to `StorageLevel.NONE` (which no longer happens). This is reflected in the changes made in `StorageTab.scala` and `StorageUtils.scala`.

----------

If you have been following this chain of PRs like pwendell, you will quickly notice that this reverts the changes in #1249, which reverts the changes in #1080. In other words, we are adding back the changes from #1080, and fixing SPARK-2307 on top of those changes. Please ask questions if you are confused.

Author: Andrew Or <andrewor14@gmail.com>

Closes #1255 from andrewor14/storage-ui-fix-reprise and squashes the following commits:

45416fa [Andrew Or] Merge branch 'master' of github.com:apache/spark into storage-ui-fix-reprise
a82ea25 [Andrew Or] Add tests for StorageStatusListener
8773b01 [Andrew Or] Update comment / minor changes
3afde3f [Andrew Or] Correctly report the number of blocks on SparkUI
(cherry picked from commit 3894a49be9b532cc026d908a0f49bca850504498)

Signed-off-by: Patrick Wendell <pwendell@gmail.com>
SPARK-2282: Reuse PySpark Accumulator sockets to avoid crashing Spark

JIRA: https://issues.apache.org/jira/browse/SPARK-2282

This issue is caused by a buildup of sockets in the TIME_WAIT stage of TCP, which is a stage that lasts for some period of time after the communication closes.

This solution simply allows us to reuse sockets that are in TIME_WAIT, to avoid issues with the buildup of the rapid creation of these sockets.

Author: Aaron Davidson <aaron@databricks.com>

Closes #1220 from aarondav/SPARK-2282 and squashes the following commits:

2e5cab3 [Aaron Davidson] SPARK-2282: Reuse PySpark Accumulator sockets to avoid crashing Spark
(cherry picked from commit 97a0bfe1c0261384f09d53f9350de52fb6446d59)

Signed-off-by: Patrick Wendell <pwendell@gmail.com>
[SPARK-2059][SQL] Don't throw TreeNodeException in `execution.ExplainCommand`

This is a fix for the problem revealed by PR #1265.

Currently `HiveComparisonSuite` ignores output of `ExplainCommand` since Catalyst query plan is quite different from Hive query plan. But exceptions throw from `CheckResolution` still breaks test cases. This PR catches any `TreeNodeException` and reports it as part of the query explanation.

After merging this PR, PR #1265 can also be merged safely.

For a normal query:

```
scala> hql("explain select key from src").foreach(println)
...
[Physical execution plan:]
[HiveTableScan [key#9], (MetastoreRelation default, src, None), None]
```

For a wrong query with unresolved attribute(s):

```
scala> hql("explain select kay from src").foreach(println)
...
[Error occurred during query planning: ]
[Unresolved attributes: 'kay, tree:]
[Project ['kay]]
[ LowerCaseSchema ]
[  MetastoreRelation default, src, None]
```

Author: Cheng Lian <lian.cs.zju@gmail.com>

Closes #1294 from liancheng/safe-explain and squashes the following commits:

4318911 [Cheng Lian] Don't throw TreeNodeException in `execution.ExplainCommand`

(cherry picked from commit 544880457de556d1ad52e8cb7e1eca19da95f517)
Signed-off-by: Reynold Xin <rxin@apache.org>
[SPARK-1199][REPL] Remove VALId and use the original import style for defined classes.

This is an alternate solution to #1176.

Author: Prashant Sharma <prashant.s@imaginea.com>

Closes #1179 from ScrapCodes/SPARK-1199/repl-fix-second-approach and squashes the following commits:

820b34b [Prashant Sharma] Here we generate two kinds of import wrappers based on whether it is a class or not.
(cherry picked from commit d43415075b3468fe8aa56de5d2907d409bb96347)

Signed-off-by: Patrick Wendell <pwendell@gmail.com>
Update SQLConf.scala

use concurrent.ConcurrentHashMap instead of util.Collections.synchronizedMap

Author: baishuo(白硕) <vc_java@hotmail.com>

Closes #1272 from baishuo/master and squashes the following commits:

51ec55d [baishuo(白硕)] Update SQLConf.scala
63da043 [baishuo(白硕)] Update SQLConf.scala
36b6dbd [baishuo(白硕)] Update SQLConf.scala
864faa0 [baishuo(白硕)] Update SQLConf.scala
593096b [baishuo(白硕)] Update SQLConf.scala
7304d9b [baishuo(白硕)] Update SQLConf.scala
843581c [baishuo(白硕)] Update SQLConf.scala
1d3e4a2 [baishuo(白硕)] Update SQLConf.scala
0740f28 [baishuo(白硕)] Update SQLConf.scala

(cherry picked from commit 0bbe61223eda3f33bbf8992d2a8f0d47813f4873)
Signed-off-by: Reynold Xin <rxin@apache.org>
[SPARK-2059][SQL] Add analysis checks

This replaces #1263 with a test case.

Author: Reynold Xin <rxin@apache.org>
Author: Michael Armbrust <michael@databricks.com>

Closes #1265 from rxin/sql-analysis-error and squashes the following commits:

a639e01 [Reynold Xin] Added a test case for unresolved attribute analysis.
7371e1b [Reynold Xin] Merge pull request #1263 from marmbrus/analysisChecks
448c088 [Michael Armbrust] Add analysis checks

(cherry picked from commit b3e768e154bd7175db44c3ffc3d8f783f15ab776)
Signed-off-by: Reynold Xin <rxin@apache.org>
HOTFIX: Merge issue with cf1d46e4.

The tests in that patch used a newer constructor for TaskInfo.
Updating CHANGES.txt file
[maven-release-plugin] prepare release v1.0.1-rc2
[maven-release-plugin] prepare for next development iteration
[SPARK-2370][SQL] Decrease metadata retrieved for partitioned hive queries.

Author: Michael Armbrust <michael@databricks.com>

Closes #1305 from marmbrus/usePrunerPartitions and squashes the following commits:

744aa20 [Michael Armbrust] Use getAllPartitionsForPruner instead of getPartitions, which avoids retrieving auth data

(cherry picked from commit 9d006c97371ddf357e0b821d5c6d1535d9b6fe41)
Signed-off-by: Reynold Xin <rxin@apache.org>
[SPARK-2366] [SQL] Add column pruning for the right side of LeftSemi join.

The right side of `LeftSemi` join needs columns only used in join condition.

Author: Takuya UESHIN <ueshin@happy-camper.st>

Closes #1301 from ueshin/issues/SPARK-2366 and squashes the following commits:

7677a39 [Takuya UESHIN] Update comments.
786d3a0 [Takuya UESHIN] Rename method name.
e0957b1 [Takuya UESHIN] Add column pruning for the right side of LeftSemi join.

(cherry picked from commit 3da8df939ec63064692ba64d9188aeea908b305c)
Signed-off-by: Michael Armbrust <michael@databricks.com>
[SPARK-2327] [SQL] Fix nullabilities of Join/Generate/Aggregate.

Fix nullabilities of `Join`/`Generate`/`Aggregate` because:
- Output attributes of opposite side of `OuterJoin` should be nullable.
- Output attributes of generater side of `Generate` should be nullable if `join` is `true` and `outer` is `true`.
- `AttributeReference` of `computedAggregates` of `Aggregate` should be the same as `aggregateExpression`'s.

Author: Takuya UESHIN <ueshin@happy-camper.st>

Closes #1266 from ueshin/issues/SPARK-2327 and squashes the following commits:

3ace83a [Takuya UESHIN] Add withNullability to Attribute and use it to change nullabilities.
df1ae53 [Takuya UESHIN] Modify nullabilize to leave attribute if not resolved.
799ce56 [Takuya UESHIN] Add nullabilization to Generate of SparkPlan.
a0fc9bc [Takuya UESHIN] Fix scalastyle errors.
0e31e37 [Takuya UESHIN] Fix Aggregate resultAttribute nullabilities.
09532ec [Takuya UESHIN] Fix Generate output nullabilities.
f20f196 [Takuya UESHIN] Fix Join output nullabilities.

(cherry picked from commit 9d5ecf8205b924dc8a3c13fed68beb78cc5c7553)
Signed-off-by: Michael Armbrust <michael@databricks.com>
[SPARK-1977][MLLIB] register mutable BitSet in MovieLenseALS

Author: Neville Li <neville@spotify.com>

Closes #1319 from nevillelyh/gh/SPARK-1977 and squashes the following commits:

1f0a355 [Neville Li] [SPARK-1977][MLLIB] register mutable BitSet in MovieLenseALS

(cherry picked from commit f7ce1b3b48f0354434456241188c6a5d954852e2)
Signed-off-by: Xiangrui Meng <meng@databricks.com>
[SPARK-2339][SQL] SQL parser in sql-core is case sensitive, but a table alias is converted to lower case when we create Subquery

Reported by http://apache-spark-user-list.1001560.n3.nabble.com/Spark-SQL-Join-throws-exception-td8599.html
After we get the table from the catalog, because the table has an alias, we will temporarily insert a Subquery. Then, we convert the table alias to lower case no matter if the parser is case sensitive or not.
To see the issue ...
```
val sqlContext = new org.apache.spark.sql.SQLContext(sc)
import sqlContext.createSchemaRDD

case class Person(name: String, age: Int)

val people = sc.textFile("examples/src/main/resources/people.txt").map(_.split(",")).map(p => Person(p(0), p(1).trim.toInt))
people.registerAsTable("people")

sqlContext.sql("select PEOPLE.name from people PEOPLE")
```
The plan is ...
```
== Query Plan ==
Project ['PEOPLE.name]
 ExistingRdd [name#0,age#1], MapPartitionsRDD[4] at mapPartitions at basicOperators.scala:176
```
You can find that `PEOPLE.name` is not resolved.

This PR introduces three changes.
1.  If a table has an alias, the catalog will not lowercase the alias. If a lowercase alias is needed, the analyzer will do the work.
2.  A catalog has a new val caseSensitive that indicates if this catalog is case sensitive or not. For example, a SimpleCatalog is case sensitive, but
3.  Corresponding unit tests.
With this PR, case sensitivity of database names and table names is handled by the catalog. Case sensitivity of other identifiers are handled by the analyzer.

JIRA: https://issues.apache.org/jira/browse/SPARK-2339

Author: Yin Huai <huai@cse.ohio-state.edu>

Closes #1317 from yhuai/SPARK-2339 and squashes the following commits:

12d8006 [Yin Huai] Handling case sensitivity correctly. This patch introduces three changes. 1. If a table has an alias, the catalog will not lowercase the alias. If a lowercase alias is needed, the analyzer will do the work. 2. A catalog has a new val caseSensitive that indicates if this catalog is case sensitive or not. For example, a SimpleCatalog is case sensitive, but 3. Corresponding unit tests. With this patch, case sensitivity of database names and table names is handled by the catalog. Case sensitivity of other identifiers is handled by the analyzer.

(cherry picked from commit c0b4cf097de50eb2c4b0f0e67da53ee92efc1f77)
Signed-off-by: Michael Armbrust <michael@databricks.com>
[SPARK-2386] [SQL] RowWriteSupport should use the exact types to cast.

When execute `saveAsParquetFile` with non-primitive type, `RowWriteSupport` uses wrong type `Int` for `ByteType` and `ShortType`.

Author: Takuya UESHIN <ueshin@happy-camper.st>

Closes #1315 from ueshin/issues/SPARK-2386 and squashes the following commits:

20d89ec [Takuya UESHIN] Use None instead of null.
bd88741 [Takuya UESHIN] Add a test.
323d1d2 [Takuya UESHIN] Modify RowWriteSupport to use the exact types to cast.

(cherry picked from commit 4deeed17c4847f212a4fa1a8685cfe8a12179263)
Signed-off-by: Michael Armbrust <michael@databricks.com>