EX-79 (cgates): Simplify logging for merge
ex-79 (jebene/cgates/kmeng) - started logger
ex-79 (jebene/cgates/kmeng) - Merge branch 'develop' into logging
Merge remote-tracking branch 'origin/develop' into logging
Ex-79(kmeng/cgates): Committing merge.py changes.
EX-79(kmeng/cgates): logger.py tested, merge being refactored to use it.
EX-79(kmeng/cgates): Simplified log statements to console when merging.
EX-80 (jebene) - log details saved to file
EX-95 (jebene) - extended logging to account for errors
EX-84 (jebene) - extended logging to all other commands (aside from
legacy commands)
EX-84 (jebene/kmeng/cgates) - made all tests pass
EX-90: Adding verbose suppression.
Merge branch 'logging' of
https://github.com/umich-brcf-bioinf/ExomeSeqPipeline.git into logging

Conflicts:
	jacquard/jacquard.py
	jacquard/logger.py
	test/logger_test.py
EX-90(kmeng/jebene): Finalized verbose statements.