Writing tests, hatin' it
Start removing extra information I don't think we need, e.g. SampleSheet.csv, Basecalls
generate runParameters.xml dummy file
Additional work on generating test Illumina demultiplexed flowcell
Finish create_demultiplexed_flowcell(), bug fixes, take default arg gen out of function definition
Absolute imports -> relative imports (breaks running as a script)
Bugfixes
Refactor code, notice bugs
Add continue to try-except
Testing testing 1 2 3
Script, you'll be a package soooon / remove comments
Start moving things out of common/__init__.py
Change function name from common.main to common.process_demultiplexed_flowcells
Restructuring package although I wish I had committed this last night because now it looks like I lost some of the changes
More package restructuring
Remove functions migrated to other files, fix imports
Minor import fixes and so on
Keep bcbio code halfway updated
Fix generate_sample_file_name function
Fix lane parsing from filename to return a single-digit int