Merge pull request #2501 from dominikl/group_security_violation_2

Update permission downgrade message
Merge pull request #2509 from joshmoore/tiles-py-fix

Tiles py fix
Handle null sizes for better sorting

By wrapping all accesses to `f.size` with
`COALESCE(f.size, 0)` the summations and
orderings should now be more correct.

Also included fileset file counts in the
overall file total.
Update dev_5_0 submodules

Repository: openmicroscopy/openmicroscopy
Already up-to-date.

Repository: openmicroscopy/bioformats
Updating c799e87..a25507b
Merged PRs (fast-forward):
  # PR 1112 joshmoore 'LogbackTools: silence ClassCastException traces'
  # PR 1111 hflynn 'User docs tidying'
  # PR 1090 melissalinkert 'Add initial support for reading BinaryOnly OME-TIFF datasets'
  # PR 1104 ctrueden 'Update native-lib-loader to 2.0.1 release'
  # PR 1078 melissalinkert 'Lots of Zeiss CZI fixes'
  # PR 1095 melissalinkert 'Fix memo file path creation on Windows'
  # PR 1094 melissalinkert 'Imaris HDF: make sure that all resolutions have the same ZCT sizes'
  # PR 1093 sbesson 'BF docs: Jenkins cleanup'
  # PR 1080 melissalinkert 'Exclude log4j and packages from target-test-runner'
  # PR 1091 melissalinkert 'MRC: fix handling of mode 16 data'
  # PR 1018 melissalinkert 'Flex: fix support for new file naming scheme'
  # PR 1087 melissalinkert 'Metamorph .nd performance improvements'
  # PR 1081 melissalinkert 'Disable file grouping in ImageJ remote import plugin'
  # PR 1085 melissalinkert 'Fix single plane ND2 line scan'
  # PR 1086 melissalinkert 'QuickTime: fix header/footer parsing bug'
  # PR 1084 rleigh-dundee 'make: Convert variables to ant properties'
  # PR 1077 melissalinkert 'CellSens: fix off-by-ones in subresolution tile calculations'
  # PR 1079 melissalinkert 'Gatan metadata fixes'
  # PR 1061 melissalinkert 'Fix 5D Imspector support'
  # PR 1067 imunro 'Allow for a >1 count increment in B&H .sdt Files.'
  # PR 1072 hflynn 'Adding CONTRIBUTING file to BF repo'
  # PR 1074 rleigh-dundee 'docs: Delegate all sphinx Makefile targets to ant'
  # PR 1071 hflynn 'Remove dead bitmap link'

Repository: ome/scripts
Updating d1f6aae..dde2482
Merged PRs (fast-forward):
  # PR 83 sbesson 'Copyright bump'
  # PR 82 will-moore 'Get inputs all scripts'
  # PR 77 will-moore 'Make movie format time 12254'
  # PR 78 sbesson 'Travis fix'

Repository: openmicroscopy/ome-documentation
Updating 25ff911..9fb9f01
Merged PRs (fast-forward):
  # PR 781 aleksandra-tarkowska 'ldap over ssl instruction improvement'
  # PR 779 aleksandra-tarkowska 'Webstart template'
  # PR 778 mtbc 'document new // separator in omero.fs.repo.path'
  # PR 780 mtbc 'warn that in-place ln_s can be slower for HCS'
  # PR 777 sbesson 'Remove all references to CI jobs in the official documentation (rebased onto dev_5_0)'
  # PR 774 will-moore 'Custom web login 11961'
  # PR 775 rleigh-dundee 'build: Support JENKINS_JOB'
  # PR 773 rleigh-dundee 'make: Convert variables to ant properties'
  # PR 763 rleigh-dundee 'Deprecate Ice 3.3 and note its removal for 5.1'
  # PR 770 hflynn 'Adding pyramid generation data duplication warning to in-place import'
  # PR 765 hflynn 'Making API doc links point at release version'
  # PR 764 hflynn 'Rephrasing CONTRIBUTING re: branch for PRs'
  # PR 767 rleigh-dundee 'ant: Default all properties and handle empty vars in conf.py'
  # PR 762 rleigh-dundee 'Delegate all Makefile targets to ant'
  # PR 757 hflynn 'ticket 10030 fix - contributing file for docs repo'
  # PR 749 hflynn 'Adding API doc links to OMERO docs front page'

Generated by OMERO-5.0-latest-submods#396 (http://ci.openmicroscopy.org/job/OMERO-5.0-latest-submods/396/)
Fix 'the the' typo
Move excludes comment to initQueryString docs
Merge pull request #2410 from snoopycrimecop/merge/dev_5_0/submodules

Update dev_5_0 submodules
Merge pull request #2504 from dominikl/loading_tiles_NPE

NPE when loading tiles
Merge pull request #2479 from joshmoore/import-debug

Parsing of `--debug` on import
Merge pull request #2487 from joshmoore/rebased/dev_5_0/maven-ant-improvements

Maven/ant improvements (rebased onto dev_5_0)
Merge pull request #2511 from joshmoore/12279-eventlog-query

EventLog Query (trac-12279)
Merge pull request #2365 from joshmoore/12145-rnd-settings

Shared rendering settings
Merge pull request #2503 from joshmoore/12176-attach-fsfiles

12176 attach fsfiles
fixing TypeError, close #12285
moving tooltipbox up to the front
Fix ClassCastException in AttributeSet (Fix #11286)

The helper getAttributeSortedStringSet fails loudly on
properties which are not strings. Instead we get each
object and do our best to convert it into a String.
Remove scifio from .classpath-template
Do not use owner settings when admin.
Fix lenght typo
Enable DropBox on 2008Server (see #12289)

The hard-coded settings disallowed Windows Server
2008. This simply copies the 2003Server configuration
and replaces 3 with 8.