Merge pull request #1425 from jburel/tolerance

Convert tolerance to NonNegativeInt to NonNegativeFloat
Merge pull request #1439 from sbesson/bioformats_eclipse

Update Eclipse instructions for Bio-Formats with link to ome-devel thread
Merge pull request #1434 from rleigh-dundee/cmake-boostchecks

cpp: cmake: RegexChecks: Improve include usage for portability
OME-XML: prevent IndexOutOfBoundsException if BinData is empty
Merge branch 'ome-xml-fix' of github.com:melissalinkert/bioformats into ome-xml-fix
Merge pull request #1436 from rleigh-dundee/cpp-module2

cpp: compat: Add path type lookups to module
Merge pull request #1418 from rleigh-dundee/reader-deprecated-rm

IFormatReader: Remove deprecated methods
Merge pull request #1440 from melissalinkert/12624

DICOM: fix byte skipping for >8 bit data
Merge pull request #1428 from rleigh-dundee/cpp-metadata

C++: Incremental metadata processing work
merge develop -Dorg -Ssuccess-only: PR 1407 (TIFF: fix plane count calculation for pyramids with multiple planes)
merge develop -Dorg -Ssuccess-only: PR 1420 (Updating samples and adding units samples)
merge develop -Dorg -Ssuccess-only: PR 1431 (Specification: Add XML catalogues for released schemas)
merge develop -Dorg -Ssuccess-only: PR 1441 (Fix OME-XML BinData decoding)
merge develop -Dorg -Ssuccess-only: PR 1442 (Update roi handler)
merge develop -Dorg -Ssuccess-only

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 1447 sbesson 'Add python-bioformats to the documentation' (status: pending)
  # PR 1437 stelfrich 'Changed handling of empty series names in ND2 files' (user: stelfrich)
  # PR 1444 snoopycrimecop 'Update auto-generated documentation' (status: pending)
  # PR 1015 qidane 'Messy binary' (exclude comment)
  # PR 1381 melissalinkert 'Parse physical pixel sizes from CellSens .vsi datasets' (label: exclude)
  # PR 1365 ctrueden 'PrairieView 5.2 fixes and improvements' (label: exclude)
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (label: exclude)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (label: exclude)
  # PR 1443 joshmoore 'Genshi ZIP' (label: exclude)
  # PR 1177 rleigh-dundee 'specification: Add metadata for HDF5 embedding' (exclude comment)
  # PR 1448 melissalinkert 'Metamorph: allow both sanitized and unsanitized delimiters' (status: pending)
  # PR 1383 LeeKamentsky 'Fix im3 metadata' (user: LeeKamentsky)
  # PR 1309 melissalinkert 'Allow tile-based access of large JPEG-2000 images' (exclude comment)
  # PR 1161 sommerc 'Initial CellH5 Reader class' (user: sommerc)
  # PR 1435 joshmoore 'Ordered MapPairs implementation' (label: breaking)
  # PR 1366 ctrueden 'Miscellaneous cleanup' (label: exclude)
  # PR 1426 qidane 'Initial Rendering Definitions schema' (exclude comment)
Updating c2525bf..b9213df
Previously merged:
  # PR 1428 rleigh-dundee 'C++: Incremental metadata processing work'
  # PR 1440 melissalinkert 'DICOM: fix byte skipping for >8 bit data'
  # PR 1418 rleigh-dundee 'IFormatReader: Remove deprecated methods'
  # PR 1436 rleigh-dundee 'cpp: compat: Add path type lookups to module'
  # PR 1434 rleigh-dundee 'cpp: cmake: RegexChecks: Improve include usage for portability'
  # PR 1439 sbesson 'Update Eclipse instructions for Bio-Formats with link to ome-devel thread'
  # PR 1425 jburel 'Convert tolerance to NonNegativeInt to NonNegativeFloat'

Merged PRs:
  # PR 1407 melissalinkert 'TIFF: fix plane count calculation for pyramids with multiple planes'
  # PR 1420 qidane 'Updating samples and adding units samples'
  # PR 1431 rleigh-dundee 'Specification: Add XML catalogues for released schemas'
  # PR 1441 melissalinkert 'Fix OME-XML BinData decoding'
  # PR 1442 bramalingam 'Update roi handler'

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