Display all samples in rank order so that noise shows up at the bottom (even if marked as good).  Attempt to bracket the cutoffs to prevent totally out of range answers.
Merge branch 'master' of github.com:genghis88/OpticalMaps

Adopted minIndex function

Conflicts:
	MapResolver.jar
	src/hps/nyu/fa14/solver/OpticalMapSolver.java
Merge branch 'master' of https://github.com/ck1456/OpticalMaps

Conflicts:
	MapResolver.jar
	src/hps/nyu/fa14/solver/OpticalMapSolver.java