Updated to 1.1

1.This version splits the whole pipeline into two major modules, signal
extraction and quantitation modules (details see the manual). so the
program does not call the external programs for peptide identification.
This provides flexibility for using different search engines or combined
search analysis by iProphet.

2.Add serialization for storing objects into binary files, so MySQL is
not required anymore

3.Add support for MSX, variable isolation windows of SWATH (DIA), and
MSE, you need to specify it in parameter files
Manal 1.0 changed