created a spectrum_identifications controller, in the view I show the SI , SAR and SIP as partials. Also moved public/ stylesheets, javascript and images to app/assets according to Rails4
I have been struggling to get a simple coffeescript function executed, what a loser
added a coffeescript to toggle view of Sar, Sip and more under Spectrum Identifications view
proteopathogen.geany
removed test/ directory, added spec/ instead , changed application.rb to specify the new test framework, created factory girl spec/factories and some capybara shits in spec/features
added spec/models , created  spec/models/user_spec.rb.  also I should move mzid_files_spec from features to a spec/controllers
added specs for experiment, mzid_file, spectrum_identification and their corresponding factories
created factories -stubs- for most of the models, also created sip and sil specs . Also tdd in action ! -> added  validate search_type  presence true in sip model
factories for most of the models with associations; specs for sil, sir, sii, psa, pep_ev
factories and specs for pd, pdh, pdl, pdp, and more
moved mzid_files_spec to spec/controllers, where it belongs
 controller spec for mzid_files / experiments. tests, and passes, the index lists all mzid files and renders the index view
experiments and mzid_files   model and controller specs
change to spectrum_identification controller spec. Test passes ok
created sir controller spec. still empty
mzidfiles is now nested under experiments and s_i is nested within mzid_files. Also added Searched_modifications in sip table in s_i view
spectrum identifications feature spec tests the si tables display correctly and links to each corresponding sir. test passes
spectrum identification results view
created a spectrum identification item partial to be updated ajaxy in spectrum identification results
trying to make the datatables thing work