Initial updates for Re-ingest AIP

refs #6488

Reuse existing DIP from AIP MSCLs and update for newer, more general use
case.

Update determineAIPVersionKeyExitCode to default to the only path
available, as there are no exceptions to AIP processing currently.
Remove assignFauxFileUUIDs and renameDIPFauxToOrigUUIDs as we won't be
using fake IDs to separate the original SIP from the reingested AIP.

Many SQL updates:
* Fix typos, remove bizarre links
* Update microservice groups to make them more contiguous
* Verify checksums moved to after metadata processing, as metadata
generates checksums too
* Metadata reminder moved to before submission documentation and
metadata processed
* Remove old style file ID
* Update reingest chain to use existing DIP and AIP creation, instead
of custom path
* Add processingMCP to reingest path
* Remove useless magic link, clean up setup for normalization and
setting which normalization node to go to
* Delete all TasksConfigs and StandardTasksConfigs that have no foreign
keys pointing at them
Rename DIPfromAIP to reingest AIP

refs #6488

Rename MicroServiceChainLinks and watched directory to reflect actual
purpose.
MCPServer sets currentPath in watchedDirectories

When starting a chain from a watched directory, ensure a SIP's
current path matches the one found in the directory.  This can happen
during AIP reingest, where the last know location is not the watched
directory it is currently in. Do not change currentPath for DIPs, as
they can run in parallel with the originating SIP and overwrite the
SIP's information. Also, some cleanup.
Entry filter in browse is configurable

The filter to determine which files/folders are displayed when browsing the
storage service (ie starting a transfer) is now a parameter, instead of
builtin.  Default is still to display folders but not files.
Stub of add metadata files

wip
Fill in add metadata files

squash with above and add better commit message later
Post API information to storage service

If default setup requested, post the initial user and API key to the
storage service when registering.
Add start reingest endpoint

refs #6488

Add start reingest endpoint to move the new SIP from tmp to the reingest
watched directory.  This is where any pre-processing will happen, such as
clearing remnants of the old SIP from the DB.

Update helpers.json_response to accept a status code to pass to the
response.
Handle failed reingest

refs #6488

Update reject reingest to use normal rejected SIP chain.  Rejected or
failed SIPS attempt to reset their ingest status with the storage service.
Display errors from the storage service properly when starting reingest.
Add reingest SIP type

refs #6488

Add an AIP/AIC Reingest type to sip_types to distinguish between a normal
SIP and one that is being reingested.  This is primarily useful when
storing the AIP, as we want to update the package on the storage service
(PUT), not create a new one (POST).
Remove unused client scripts

Remove client scripts and entries in archivematicaClientModules for
scripts that do not appear in database and are never imported in
codebase.  Remove client scripts that are not listed as a client
modules and never imported.
Fix manual normalization for access

refs #6753

When a manual normalization access directory is found, a client script
sets the UnitVariable that controls if a DIP is created.  After a
cleanup of MicroServiceChainLinks, this pointed to a non-existent MSCL.
Update to point to new MSCL.