Specify custom naming function for job processor

Added ability to specify custom naming function for job processor.
Fixed bug in indefinite run stop

Fixed bug in the argument to prevent an indefinite run of the job
processor
Added in progress folder for job processor

Job Processor now moves acqObj to "in progress" folder and then, once
completed, moves to done folder
am2PInit ignores processed files

Updated am2PInit to ignore files processed using the previous processing
stream